Computational Analysis and Design of Proteins

We service Computational Analysis and Design of Proteins:

  • Prediction of tertiary and quaternary structure based on amino acid sequence (homology modeling, threading, ab initio, own methods),
  • Functional modeling (electrodiffusion theory, Molecular Dynamics, Brownian Dynamics),
  • Modeling effects of mutations on structure and function,
  • Computational validation of native and synthetic protein models,
  • Computer-aided design of proteins,
  • Analysis of experimental data and design of nanopores
  • Design of statistical and heuristic dedicated models (SVM, Bayesian methods, probabilistic grammatical and Markovian models)
  • Development and integration of existing methods and open source software
  • Acquisition, validation and consolidation of publicly available databases and ontologies
  • Technical support for users of open source applications

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